Publications

*Indicates research was conducted as a collaboration across multiple Projects and/or Cores

Liu CH, Chu WY, Li H, Boyd SA, Teppen BJ, Mao JD, Lehmann J, Zhang W. (2019) Quantification and characterization of dissolved organic carbon from biochars. Geoderma. 335:161-169.

*Sallach JB, Crawford R, Li H, Johnston CT, Teppen BJ, Kaminski NE, Boyd SA. (2019) Activated carbons of varying pore structure eliminate the bioavailability of 2,3,7,8-tetrachlorodibenzo-p-dioxin to a mammalian (mouse) model.  Sci Total Environ. 2019 Feb 10; 650(Pt 2):2231-2238. doi: 10.1016/j.scitotenv.2018.09.270.  Epub 2018 Sep 22.  PubMed PMID: 30292116.

*Dornbos P, Warren M, Crawford RB, Kaminski NE, Threadgill DW, LaPres JJ. (2018) Characterizing Serpinb2 as a Modulator of TCDD-Induced Suppression of the B Cell.  Chem Res Toxicol. 2018 Nov 19;31(11):1248-1259. doi:10.1021/acs.chemrestox.8b00225. Epub 2018 Oct 30. PubMed PMID: 30339366.

Fader KA, Nault R, Raehtz S, McCabe LR, Zacharewski TR. (2018) 2,3,7,8-Tetrachlorodibenzo-p-dioxin dose-dependently increases bone mass and decreases marrow adiposity in juvenile mice. Toxicol Appl Pharmacol.  348:85-98. PMC5984050.

Goodman JI. (2018) Goodbye to the bioassay. Toxicol Res (Camb). 7(4):558-564. PMC6062362.

Hamm J, Cox J, Zwickle A, Zhuang J, Cruz S, Upham B, Chung M and Dearing JW. (2018) Trust in whom? Dioxin, organizations, risk perception, and fish consumption in Michigan’s Saginaw Bay Watershed.  Journal of Risk Research.  (in press).

Konganti K, Ehrlich A, Rusyn I, Threadgill DW. (2018) gQTL: A Web Application for QTL Analysis Using the Collaborative Cross Mouse Genetic Reference Population.  G3 (Bethesda).  8(8):2559-2562. PMC6071593.

Nault R, Doskey CM, Fader KA, Rockwell CE and Zacharewski TR. (2018) Comparison of hepatic NRF2 and AHR binding in 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) treated mice demonstrates NRF2-independent PKM2 induction.  Mol Pharmacol.  94(2):876-884. PMC6022803.

*Stedtfeld RD, Guo X, Stedtfeld TM, Sheng H, Williams MR, Hauschild K, Gunturu S, Tift L, Wang F, Howe A, Chai B, Yin D, Cole JR, Tiedje JM and Hashsham SA. (2018) Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements.  FEMS Microbiol Ecol. 94(9).  PMID:30052926.

Williams MR and Hashsham SA. (2018) Direct or DNA Extraction-Free Amplification and Quantification of Foodborne Pathogens, Methods Molecular Biology, Vol. 1918, Arnaud Bridier (Eds): Foodborne Bacterial Pathogens.  Springer Nature (In Press).

Zhang Q, Li J, Middleton A, Bhattacharya S, Conolly RB. (2018) Bridging the Data Gap From in vitro Toxicity Testing to Chemical Safety Assessment Through Computational Modeling.  Front Public Health. 6:261. PMC6141783.

Zhang S, Liu Q, Cheng H, Gao F, Liu C, Teppen BJ. (2018) Mechanism Responsible for Intercalation of Dimethyl Sulfoxide in Kaolinite: Molecular Dynamics Simulations. Appl Clay Sci. 151:46-53.  PMC5846688.

Zhang S, Liu Q, Gao F, Ma R, Wu Z, Teppen BJ. (2018) Interfacial Structure and Interaction of Kaolinite Intercalated with N-methylformamide Insight from Molecular Dynamics Modeling. Appl Clay Sci. 2018 Jun 15;158:204-210. PMC6197067.

Zhang S, Liu Q, Gao F, Teppen BJ. (2018) Molecular Dynamics Simulation of Basal Spacing, Energetics, and Structure Evolution of a Kaolinite-Formamide Intercalation Complex and Their Interfacial Interaction.  J Phys Chem C Nanomater Interfaces.  122(6):3341-3349. PMC5896007.

Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Zhang W, Zhu D, Li H. (2018) Bioavailability of tetracycline to antibiotic resistant Escherichia coli in water-clay systems.  Environ Pollut. 243(Pt B):1078-1086. PMID: 30253298.

Zhou J, Henriquez JE, Crawford RB, Kaminski NE. (2018) Suppression of the IgM response by Aryl hydrocarbon receptor activation in human primary B cells involves impairment of immunoglobulin secretory processes. Toxicol. Sci. 163:319-329. PMID: 29462421.

*Zhou J, Zhang Q, Crawford RB and Kaminski NE. (2018) Lymphocyte-specific protein tyrosine kinase (LCK) is involved in the aryl hydrocarbon receptor (AHR)-mediated impairment of Immunoglobulin secretion in human primary B cells. Toxicol. Sci. 165(2):322-334. PMID: 29860352.

Zhuang J, Cox J, Dearing JW, Chung M, Hamm J, Zwickle A and Upham B. (2018) Still dangerous after all these years?  Setting the media agenda for dioxin contamination.  Under review at Environmental Communication.

Ahn E, Choi KY, Kang BS, Zylstra GJ, Kim D, Kim E. (2017) Salicylate degradation by a cold-adapted Pseudomonas sp.  Ann Microbiol.  67:417-424.

*Boyd SA, Sallach JB, Zhang Y, Crawford R, Li H, Johnston CT, Teppen BJ and Kaminski, NE. (2017) Sequestration of TCDD by activated carbon eliminates bioavailability and the suppression of immune function in mice. Environ Toxicol Chemistry. 36:2671-2678. PMID: 28370362.

Chen Z, Zhang W, Wang G, Zhang Y, Gao Y, Boyd SA, Teppen BJ, Tiedje JM, Zhu D, Li H. (2017) Bioavailability of Soil-Sorbed Tetracycline to Escherichia coli under Unsaturated Conditions. Environ Sci Technol. 51(11):6165-6173. PMID: 28525258.

Clemente JS, Beauchemin S, MacKinnon T, Martin J, Johnston CT, Joern B. (2017) Initial biochar properties related to the removal of As, Se, Pb, Cd, Cu, Ni, and Zn from an acidic suspension.  Chemosphere.  170:216-224. PMID: 28006756.

Dornbos P and LaPres JJ. (2017) Incorporating population-level genetic variability within laboratory models in toxicology: From the individual to the population.  Toxicology. 395:1-8.  PMC5801153.

Fader KA, Nault R, Kirby MP, Markous G, Matthews J, Zacharewski TR. (2017) Convergence of hepcidin deficiency, systemic iron overloading, heme accumulation, and REV-ERBα/β activation in aryl hydrocarbon receptor-elicited hepatotoxicity.  Toxicol Appl Pharmacol. 344:74. PMC6235142.

Fader KA, Nault R, Zhang C, Kumagai K, Harkema JR, Zacharewski TR. (2017) 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD)-elicited effects on bile acid homeostasis: Alterations in biosynthesis, enterohepatic circulation, and microbial metabolism.  Sci Rep. 7(1):5921. PMC5517430.

Fader KA, Zacharewski TR. (2017) Beyond the Aryl Hydrocarbon Receptor: Pathway Interactions in the Hepatotoxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin and Related Compounds.  Curr Opin Toxicol. 2:36-41. PMC5609723.

Henriquez JE, Zhou, J, Li Jinpeng, Crawford R, Kaminski NE. (2017) Application of gene specific mRNA level determinations in individual cells using flow cytometry-based PrimeFlow™ in immunotoxicology.  Toxicol Applied Pharmacol 75:588-596.  PMC5718209.

Johnston CT. (2017) Biochar analysis by Fourier-transform infra-red spectroscopy. In: B. Singh, M. Camps-Arbestain and J. Lehmann, editors, Biochar: A Guide to Analytical Methods. p. 199-213.

*Kovalova N, Nault R, Crawford R, Zacharewski TR, Kaminski NE. (2017) Comparative analysis of TCDD-induced AhR-mediated gene expression in human, mouse and rat primary B cells.  Toxicol Appl Pharmacol. 316:95-106. PMC5292778.

*Li Jinpeng, Bhattacharya S, Zhou J, Phadnis-Moghe AS, Crawford R and Kaminski NE. (2017) Aryl hydrocarbon receptor activation suppresses EBF1 and PAX5 and impairs human B lymphopoiesis. J. Immunol. 199:3504-3515. PMC5679724.

Masek O. and Johnston CT. (2017) Thermal analysis for biochar characterisation. In: B. Singh, M. Camps-Arbestain and J. Lehmann, editors, Biochar: A Guide to Analytical Methods. p. 283-293.

*Munir A, Waseem H, Williams, MR, Stedtfeld RD, Gulari E, Tiedje JM and Hashsham SA. (2017) Modeling hybridization kinetics of gene probes in a DNA biochip using FEMLAB.  Microarrays (Basel).  6(2):pii:E9. PMC5487956.

Nault R, Fader KA, Harkema JR, Zacharewski T. (2017) Loss of liver-specific and sexually dimorphic gene expression by aryl hydrocarbon receptor activation in C57BL/6 mice.  PLoS One. 12(9):e0184842. PMC5602546.

Nault R, Fader KA, Lydic TA, Zacharewski TR. (2017) Lipidomic Evaluation of Aryl Hydrocarbon Receptor-Mediated Hepatic Steatosis in Male and Female Mice Elicited by 2,3,7,8-Tetrachlorodibenzo-p-dioxin.  Chem Res Toxicol. 30(4):1060-1075. PMC5896278.

Phadnis-Moghe AS, Kaminski NE. (2017) Immunotoxicity Testing using Human Primary Leukocytes: An Adjunct Approach for the Evaluation of Human Risk. Curr Opin Toxicol. 3:25-29. PMC5880284.

Samhan, FA, Stedtfeld TM, Waseem H, Williams MR, Stedtfeld RD, Hashsham SA. (2017) On-filter direct amplification of Legionella pneumophila for rapid assessment of its abundance and viability.  Water Res.  121:162-170. PMC5525548.

Schnetzer F, Johnston CT, Premachandra GS, Giraudo N, Schuhmann R, Thissen P, Emmerich K. (2017) Impact of Intrinsic Structural Properties on the Hydration of 2:1 Layer Silicates. ACS Earth Space Chem.  1(10):608-620. PMC5896019.

Srinivasan S, Stedtfeld RD, Tourlousse DM, Baushke SM, Xin Y, Miller SM, Pham T, Rouillard J-M, Gulari E, Tiedje JM and Hashsham SA. (2017) Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner.  J Microbiol Methods. 139:15-21. PMC5491306.

Snow DD, Cassada DA, Larsen ML, Mware NA, Li X, D'Alessio M, Zhang Y, Sallach JB. (2017) Detection, Occurrence and Fate of Emerging Contaminants in Agricultural Environments. Water Environ Res. 89(10):897-920. PMC5896314.

*Stedtfeld RD, Chai B, Crawford RB, Stedtfeld TM, Williams M, Xiangwen S, Kuwahara T, Cole JR, Kaminski NE, Tiedje JM and Hashsham SA. (2017) Modulatory influence of segmented filamentous bacteria on transcriptomic response of gnotobiotic mice exposed to TCDD.  Front Microbiol.  8:1708.  PMC5594080.

*Stedtfeld RD, Sallach JB, Crawford RB, Stedtfeld TM, Williams MR, Waseem H, Johnston CT, Li H, Teppen B, Kaminski NE, Boyd SA, Tiedje JM and Hashsham SA. (2017) TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal.  Appl Microbiol Biotechnol. 101(19):7409-7415. PMC5909190.

*Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Chai B, Williams MR, Shook T, Logan A, Graham A, Sul WJ, VanHouten J, Cole J, Zylstra G, Tiedje JM, Upham B and Hashsham SA. (2017) Isothermal assay targeting class 1 integrase gene for environmental surveillance of ARGs.  J Environ Manage. 198(Pt 1):213-220. PMC5513725.

*Stedtfeld RD, Stedtfeld TM, Fader KA, Williams MR, Bhaduri P, Quensen J, Zacharewski TR, Tiedje JM, Hashsham SA. (2017) TCDD influences reservoir of antibiotic resistance genes in murine gut microbiome. FEMS Microbiol Ecol. 93(5). PMC5458050.

*Waseem H, Kronlein M, Stedtfeld RD, Stedtfeld TM, Chai B, Cole JR, Tiedje JM and Hashsham SA. (2017) Virulence factor activity relationships (VFARs): A bioinformatics perspective. Environ Sci Process Impacts. 19(3):247-260. PMC5897045.

Waseem H, Williams MR, Stedtfeld RD, Stedtfeld TM, Shanker R, SA Hashsham. (2017) Organ-on-chip systems for toxicity screening.  "Nanotoxicology - Experimental and Computational Perspectives”.  Royal Society of Chemistry Publishing, 2017.

Williams MR, Stedtfeld RD, Stedtfeld TM, Tiedje JM and Hashsham SA. (2017) Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device.  Biomed Microdevices.  19(3):45. PMC5896010.

Williams M, Stedtfeld RD, Tiedje JM and Hashsham SA. (2017) MicroRNAs- based inter-domain communication between the host and members of the gut microbiome.  Front Microbiol.  8:1896.  PMC5624305.

*Williams, MR, Stedtfeld RD, Waseem H, Stedtfeld T, Upham B, Khalife W, Etchebarne B, Hughes M, Tiedje JM and Hashsham SA. (2017) Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices.  Anal Methods.  9(8):1229-1241. PMC5898395.

Yeasmin S, Singh B, Johnston CT and Sparks DL. (2017) Evaluation of pre-treatment procedures for improved interpretation of mid infrared spectra of soil organic matter.  Geoderma 304: 83-92. doi:10.1016/j.geoderma.2016.04.008.

Yeasmin S, Singh B, Johnston CT and Sparks DL. (2017) Organic carbon characteristics in density fractions of soils with contrasting mineralogies. Geochim. Cosmochim. Acta 218: 215-236. doi:10.1016/j.gca.2017.09.007.

Zhang S, Liu Q, Cheng H, Gao F, Liu C, Teppen BJ. (2017) Thermodynamic Mechanism and Interfacial Structure of Kaolinite Intercalation and Surface Modification by Alkane Surfactants with Neutral and Ionic Head Groups.  J Phys Chem C Nanomater Interfaces. 121(16):8824-8831. PMC5896017.

Zhang S, Liu Q, Gao F, Li X, Liu C, Li H, Boyd SA, Johnston CT, Teppen BJ. (2017) Mechanism Associated with Kaolinite Intercalation with Urea: Combination of Infrared Spectroscopy and Molecular Dynamics Simulation Studies. J Phys Chem C Nanomater Interfaces.  121(1):402-409. PMC5896021.